The data comprises a multi-proxy dataset of 49 samples spanning approximately the time interval from 1.8-3.9 Ma according to the currently available shipboard age model from offshore the Limpopo River, southwest Indian Ocean. Data includes major and trace element chemistry and K-Ar ages from the clay fraction (<2um), radiogenic isotope geochemistry, stable isotopes of planktonic foraminifera Globigerinoides ruber. The data set is now online with a citable DOI, although with an embargo till September 2019, http://dx.doi.org/10.1594/IEDA/100719